Session 12

10:25-10:45 Local Rules for Protein Folding on the Triangular Lattice and Generalized Hydrophobicity in the HP Model

Richa Agarwala, National Institutes of Health; Serafim Batzoglou, and Scott Decatur, Massachusetts Institute of Technology; Vlado Dancik, University of Southern California; Martin Farach, Rutgers University; Sridhar Hannenhalli, University of Southern California; and Steven S. Skiena, State University of New York, Stony Brook

10:50-11:10 Mapping Clones with a Given Ordering or Interleaving

Tao Jiang, McMaster University, Canada; and Richard M. Karp, University of Washington

11:15-11:35 Numerical Taxonomy on Data: Experimental Results

Jaime Cohen and Martin Farach, Rutgers University

11:40-12:00 Inferring Evolutionary Trees from Ordinal Data

Paul Kearney, University of Toronto, Canada; Ryan Hayward, University of Lethbridge, Canada; and Henk Meijer, Queen's University, Canada

12:05-12:25 On Distances Between Phylogenetic Trees

Bhaskar DasGupta, University of Waterloo, Canada; Xin He, State University of New York, Buffalo; Tao Jiang, McMaster University, Canada; Ming Li, University of Waterloo, Canada; John Tromp, CWI, The Netherlands; and Louxin Zhang, University of Waterloo, Canada

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