%%%
%%% Bibliography "category" strings:
%%%
%%% FixMe: When cites cross category boundaries, the \cite numbers
%%% FixMe: seem to be getting reset. But when the Bibliography is
%%% FixMe: output, they are not.
%%% FixMe: Andy wants the order to be:
%%% FixMe: Book, Review, Dissertation, Article, WebSite
@String{Book = {a Books and Collections}}
@String{Review = {b Review Articles}}
@String{Dissertation = {c Dissertations and Theses}}
@String{Article = {d Research Articles}}
@String{WebSite = {e Web Sites}}
@Article{Baum67,
author = {L.E. Baum and J.A. Eagon},
title = {An Inequality with Applications to Statistical
Estimation for Probabilistic Functions of {M}arkov
Processes and to a Model for Ecology},
journal = {Bulletin of the American Mathematical Society},
year = 1967,
volume = 73,
number = 3,
pages = {360-363},
month = {May},
category = Article
}
@Article{Baum70,
author = {L.E. Baum and T. Petrie and G. Soules and N. Weiss},
title = {A maximization technique occurring in the
statistical analysis of probabilistic functions of
{M}arkov chains},
journal = {The Annals of Mathematical Statistics},
volume = 41,
number = 1,
pages = {164-171},
year = 1970,
category = Article
}
@PhdThesis{Beal03,
author = {Matthew J. Beal},
title = {Variational Algorithms for Approximate {B}ayesian
Inference},
school = {Gatsby Computational Neuroscience Unit, University
College London},
year = 2003,
note = {Chapter 3, entitled ``Variational {B}ayesian Hidden
{M}arkov Models'', review HMMs in general and
describes a {B}ayesian approach to
estimation. The full text of the thesis is available at
\biburl{http://www.cse.buffalo.edu/faculty/mbeal/papers.html}},
category = Dissertation
}
@Article{Benettin80,
author = {G. Benettin and L. Galgani and A. Giorgilli and
J.-M. Sterlcyn},
title = {{L}yapunov Characteristic Exponents for Smooth
Dynamical Systems and for {H}amiltonian Systems; A
Method for Computing All of Them},
journal = {Meccanica},
year = 1980,
volume = 15,
pages = 9,
category = Article
}
@Book{Cover91,
author = {T.M. Cover and J.A. Thomas},
title = {Elements of Information Theory},
publisher = {Wiley},
year = 1991,
address = {NY},
category = Book
}
@Article{Dempster77,
author = {A.P. Dempster and N.M. Laird and D.B. Rubin},
title = {Maximum likelihood from incomplete data via the {EM}
algorithm},
journal = {J.R. Stat. Soc. B},
volume = 39,
pages = {1-38},
year = 1977,
category = Article
}
@Book{Duda01,
author = {Richard O. Duda and Peter E. Hart and David
G. Stork},
title = {Pattern Classification},
publisher = {Wiley},
year = 2001,
edition = 2,
category = Book
}
@InProceedings{Ferguson80,
author = {J.D. Ferguson},
title = {Hidden {M}arkov Analysis: An Introduction},
booktitle = {Proc. of the Symposium on the Applications of Hidden
{M}arkov Models to Text and Speech},
publisher = {IDA-CRD},
year = 1980,
pages = {8-15},
address = {Princeton},
category = Review
}
@Book{Fletcher87,
author = {R. Fletcher},
title = {Practical Methods of Optimization},
publisher = {Wiley},
year = 1987,
category = Book
}
@Article{Fraser86,
author = {A. M. Fraser and H. L. Swinney},
title = {Independent coordinates for strange attractors from
mutual information},
journal = {Phys. Rev. A},
year = 1986,
volume = 33,
pages = {1134-1140},
month = {Feb.},
category = Article
}
@InProceedings{Freund96,
author = {Yoav Freund and Robert E. Schapire},
title = {Experiments with a New Boosting Algorithm},
booktitle = {International Conference on Machine Learning},
pages = {148-156},
year = 1996,
note = {\biburl{http://citeseer.ist.psu.edu/freund96experiments.html}},
category = Article
}
@Article{Friedman2000,
author = {Jerome Friedman and Trevor Hastie and Robert
Tibshirani},
title = {Additive logistic regression: a statistical view of
boosting},
journal = {Annals of Statistics},
year = 2000,
volume = 28,
number = 2,
pages = {337-407},
category = Review
}
@Book{GandL3,
author = {Gene H. Golub and Charles F. Van Loan},
title = {Matrix Computations},
publisher = {Johns Hopkins University Press},
year = 1996,
address = {Baltimore},
edition = 3,
category = Book
}
@Article{Gauvain94,
author = {JL Gauvain and CH Lee},
title = {Maximum {\em a posteriori} estimation for
multivariate {G}aussian mixture observations of
{M}arkov chains.},
journal = {IEEE Trans. Speech and Audio Processing},
year = 1994,
month = {April},
pages = {291-298},
volume = 2,
number = 2,
category = Article
}
@Article{Gershenfeld99,
author = {N. Gershenfeld and B. Schoner and E. Metois},
title = {Cluster-weighted modeling for time series analysis},
journal = {Nature,},
year = 1999,
volume = 379,
pages = {329-332},
category = Article
}
@Book{Gibbs,
author = {J.W. Gibbs},
title = {Elementary Principles in Statistical Mechanics
Developed with Especial Reference to the Rational
Foundation of Thermodynamics},
publisher = {Yale University Press},
year = 1902,
note = {Republished by Dover in 1960},
category = Book
}
@Article{Gordon93,
author = {N.J. Gordon and D.J. Salmond and A.F.M. Smith},
title = {Novel approach to nonlinear/non {G}aussian {B}ayesian
state estimation},
journal = {IEE Proceedings F},
year = 1993,
volume = 140,
number = 2,
pages = {107-113},
category = Article
}
@Article{Haken75,
author = {H. Haken},
title = {Analogy between higher instabilities in fluids and
laser},
journal = {Phys. Lett A},
year = 1975,
tvolume = {53A},
pages = {77-78},
category = Article
}
@Article{Hughes99,
author = {J.P. Hughes and P. Guttorp},
title = {A non-homogeneous Hidden {M}arkov Model for
Precipitation Occurrence},
journal = {Appl. Statist},
year = 1999,
volume = 48,
month = {August},
pages = {16-30},
note = {Part 1},
category = Article
}
@InProceedings{Julier97,
author = {S.J. Julier and J.K. Uhlmann},
title = {A new extension of the {K}alman filter to nonlinear
systems},
booktitle = {The 11th International Symposium on
Aerospace/Defence Sensing, Simulation and Controls,
Orlando Florida},
year = 1997,
volume = {Multi-Sensor Fusion, Tracking and Resource
Management II},
series = {Proc of AeroSense},
category = Article
}
@Book{KSH00,
author = {Thomas Kailath and Ali H. Sayed and Babak Hassibi},
title = {Linear Estimation},
publisher = {Prentice Hall},
year = 2000,
category = Book
}
@Article{Kitagawa96,
author = {G. Kitagawa},
title = {Monte-Carlo filter and smoother for non-{G}aussian
nonlinear state space models},
journal = {Journal on Computational and Graphical Statistics},
year = 1996,
volume = 5,
number = 1,
pages = {1-25},
category = Article
}
@Article{Kullback51,
author = {S. Kullback and R.A. Leibler},
title = {On Information and Sufficiency},
journal = {Ann. Math. Stat.},
year = 1951,
volume = 22,
pages = {79-86},
category = Article
}
@Article{Lorenz63,
author = {E. Lorenz},
title = {Deterministic Nonperiodic Flow},
journal = {J. Atmos. Sci.},
year = 1963,
volume = 20,
page = 130,
category = Article
}
@Book{Luenberger73,
author = {D. G. Luenberger},
title = {Introduction to Linear and Nonlinear Programming},
publisher = {Addison-Wesley},
year = 1973,
address = {Reading, MA},
category = Book
}
@Book{Maybeck79,
author = {Peter S. Maybeck},
title = {Stochastic models, estimation, and control},
publisher = {Academic Press},
year = 1979,
category = Book
}
@Book{Maybeck82,
author = {Peter S. Maybeck},
title = {Stochastic models, estimation, and control, Vol 2},
publisher = {Academic Press},
year = 1982,
category = Book
}
@Book{McLachlan96,
author = {G.J. McLachlan and T. Krishnan},
title = {The EM Algorithm and Extensions},
publisher = {Wiley},
year = 1996,
category = Book
}
@InProceedings{Ormoneit95,
author = {D Ormoneit and V Tresp},
title = {Improved {G}aussian mixture density estimates using
{B}ayesian penalty term and network averaging},
booktitle = {Advances in Neural Information Processing Systems},
year = 1995,
category = Article
}
@Article{Packard80,
author = {N. H. Packard and J. P. Crutchfield and J. D. Farmer
and R.S. Shaw},
title = {Geometry from a time series},
journal = {Phys. Rev. Lett.},
year = 1980,
volume = 45,
number = 9,
pages = {712-716},
month = {Sept. 1},
category = Article
}
@Book{Pearl91a,
author = {Judea Pearl},
year = 1991,
title = {Probabilistic reasoning in intelligent systems:
networks of plausible inference},
edition = {second},
publisher = {Morgan Kaufmann, San Mateo (Calif.)},
category = Book
}
@Article{Penzel02,
author = {T. Penzel and J. McNames and P. de Chazal and
B. Raymond and A. Murray and G. Moody},
title = {Systematic comparison of different algorithms for
apnea detection based on electrocardiogram
recordings},
journal = {Medical \& Biological Engineering \& Computing},
year = 2002,
volume = 40,
pages = {402-407},
category = Review
}
@Misc{gutenberg,
author = {Gutenberg},
title = {Project {G}utenberg},
howpublished = {Web Site},
note = {\biburl{http://www.gutenberg.org} Founded by M. Hart},
category = WebSite
}
@Misc{PhysioToolkit,
author = {PhysioNet},
title = {PhysioToolkit -- Open Source Software for Biomedical
Science and Engineering},
howpublished = {Web Site},
note = {\biburl{http://www.physionet.org/physiotools/index.shtml}},
category = WebSite
}
@Misc{FraserPhysicsHMM,
author = {Andrew M. Fraser},
title = {Software for hidden {M}arkov models},
howpublished = {Web Site},
note = {\biburl{http://www.fraserphysics.com/~andy/hmmdsbook} and
\biburl{www.siam.org/~fraser/XXXX}},
category = WebSite
}
@Misc{SIAMHMM,
author = {Andrew M. Fraser},
title = {Software for hidden {M}arkov models},
howpublished = {Web Site},
note = {\biburl{www.siam.org/~fraser/XXXX}},
category = WebSite
}
@Misc{ubuntu,
author = {Ubuntu},
title = {Ubuntu},
howpublished = {Web Site},
note = {\biburl{http://www.ubuntu.com} Distributed by Canonical Ltd.},
category = WebSite
}
@Misc{debian,
author = {debian},
title = {Debian - The Universal Operating System},
howpublished = {Web Site},
note = {\biburl{http://www.debian.org}},
category = WebSite
}
@InProceedings{Poritz88,
author = {A.B. Poritz},
title = {Hidden {M}arkov Models: A Guided Tour},
booktitle = {Proc. IEEE Intl. Conf. on Acoust. Speech and Signal
Proc.},
year = 1988,
publisher = {IEEE},
address = {Piscataway, NJ},
category = Review
}
@Book{Press92,
author = {W. H. Press and B. P. Flannery and S. A. Teukolsky
and W. T. Veterling},
title = {Numerical Recipes in C: the art of scientific
computing},
edition = {2nd},
publisher = {Cambridge University Press},
year = 1992,
address = {Cambridge},
category = Book
}
@Article{Rabiner89,
author = {L. Rabiner},
title = {A tutorial on Hidden {M}arkov Models and selected
applications in speech recognition},
journal = {Proceedings of the IEEE},
year = 1989,
volume = 77,
number = 2,
pages = {257-286},
category = Review
}
@InProceedings{Rechtsteiner2000,
author = {Andreas Rechtsteiner and Andrew M. Fraser},
title = {Hidden States for Modeling Interactions between
disparate Spatiotemporal Scales},
booktitle = {Proceedings of the International Conference on
Complex Systems (ICCS)},
year = 2000,
category = Article
}
@Article{Redner84,
author = {R.A. Redner and H.F. Walker},
title = {Mixture densities, maximum likelihood and the {EM}
algorithm},
journal = {SIAM Review},
volume = 26,
pages = {195-202},
year = 1984,
category = Article
}
@Article{Rosales04,
author = {ROSALES RA and FILL M and ESCOBAR AL},
title = {Calcium regulation of single ryanodine receptor
channel gating analyzed using HMM/MCMC statistical
methods},
journal = {J Gen Physiol},
year = 2004,
volume = 123,
number = 5,
pages = {533-53},
month = {May},
category = Article
}
@Article{Sauer91,
author = {T. Sauer and J.A. Yorke and M. Casdagli},
title = {Embedology},
journal = {J. Stat. Phys.},
year = 1991,
volume = 65,
pages = {579-616},
category = Review
}
@Book{Schafer97,
author = {J.L. Schafer},
title = {Analysis of Incomplete Multivariate Data},
publisher = {Chapman Hall/CRC},
year = 1997,
number = 72,
series = {Monographs on Statistics and Applied Probability},
category = Book
}
@InProceedings{Takens81,
author = {F. Takens},
title = {Detecting strange attractors in turbulence},
booktitle = {Dynamical Systems and Turbulence, Warwick, 1980,
Lecture notes in mathematics vol. 898},
year = 1981,
editor = {D. A. Rand and L.S. Young},
pages = {366-381},
publisher = {Springer},
address = {Berlin},
category = Article
}
@Article{Tang92,
author = {D.Y. Tang and C.O. Weiss and E. Roldan and G.J. de
Valcarcel},
title = {Deviation from {L}orenz-type dynamics of an NH$_3$
ring laser},
journal = {Optics Communications},
year = 1992,
volume = 89,
pages = {47-53},
category = Article
}
@Book{Watanabe04,
author = {Watanabe and Yamaguchi},
title = {The {EM} algorithm and related statistical models},
publisher = {Marcel Dekker},
year = 2004,
category = Book
}
@Article{Witten87,
author = {I.H. Witten and R.M. Neal and J.G. Cleary},
title = {Arithmetic Coding for Data Compression},
journal = {Comm. ACM},
volume = 30,
number = 6,
year = 1987,
month = {June},
pages = {520-540},
category = Review
}
@Article{Wu83,
author = {C.F. Jeff Wu},
title = {On the convergence properties of the {EM} algorithm},
journal = {The Annals of Statistics},
year = 1983,
volume = 11,
number = 1,
pages = {95-103},
month = {March},
category = Article
}
@Book{ida80,
title = {Symposium on the application of hidden {M}arkov models
to text and speech},
year = 1980,
editor = {J.D. Ferguson},
month = {October},
publisher = {Institute for Defense Analyses, Communications
Research Division, Princeton, NJ},
category = Book
}
@Book{katok95,
author = {Katok, Anatole and Hasselblatt, Boris},
title = {Introduction to the Modern Theory of Dynamical
Systems},
publisher = {Cambridge University Press},
year = 1995,
address = {New York, NY},
category = Book
}
@Book{mane87,
author = {Ricardo Mane},
title = {Ergodic theory and differentiable dynamics},
publisher = {Springer-Verlag},
year = 1987,
address = {Berlin},
note = {Translated from the Portuguese by Silvio Levy},
category = Book
}
@Article{pesin77,
author = {Ya. B. Pesin},
title = {Characteristic {L}yapunov exponents and smooth ergodic
theory},
journal = {Russ. Math. Surv.},
year = 1977,
volume = 32,
number = 4,
pages = {55-112},
category = Article
}
@Article{ruelle-1978-1,
author = {David Ruelle},
title = {An inequality for the entropy of differentiable
maps},
journal = {Bol. Soc. Brasil. Mat.},
year = 1978,
volume = 9,
number = 1,
pages = {83-87},
category = Article
}
@Misc{python,
author = {python},
title = {The Python Programming Language},
howpublished = {Web Site},
note = {\biburl{http://www.python.org/} Created by Guido van Rossum},
category = WebSite
}
@Misc{scipy,
author = {SciPy},
title = {SciPy - Scientific tools for Python},
howpublished = {Web Site},
note = {\biburl{http://www.scipy.org/}},
category = WebSite
}
@Article{tucker99,
author = {W. Tucker},
title = {The {L}orenz attractor exists},
journal = {C. R. Acad. Sci. Ser. I Math.},
volume = 328,
number = 12,
pages = {1197--1202},
year = 1999,
note = {\biburl{http://citeseer.ist.psu.edu/tucker99lorenz.html}},
category = Article
}
@Article{Viswanath04,
author = {Divakar Viswanath},
title = {The fractal property of the {L}orenz attractor},
journal = {Physica D},
year = {2004},
OPTkey = {},
OPTvolume = {190},
OPTnumber = {1-2},
OPTpages = {115-128},
OPTmonth = {},
OPTnote = {},
OPTannote = {},
category = Article
}
@Book{vapnik98,
author = {Vladimir Vapnik},
title = {Statistical Learning Theory},
publisher = {Wiley-Interscience},
year = 1998,
category = Book
}
@PhdThesis{vixie02,
author = {Kevin R. Vixie},
title = {Signals and Hidden Information},
school = {Portland State University},
year = 2002,
note = {available as Los Alamos Lab report LA-13881-T},
category = Dissertation
}
@InCollection{young95-1,
author = {L. Young},
title = {Ergodic theory of differentiable dynamical systems},
booktitle = {Real and Complex Dynamical Systems},
publisher = {Kluwer},
year = 1995,
note = {\biburl{http://citeseer.ist.psu.edu/young95ergodic.html}},
editor = {B. Branner and P. Hjorth},
category = Review
}
@Comment Local Variables:
@Comment mode: bibtex
@Comment bibtex-align-at-equal-sign: t
@Comment bibtex-entry-format: '(opts-or-alts numerical-fields page-dashes inherit-booktitle realign last-comma delimiters unify-case)
@Comment bibtex-maintain-sorted-entries: t
@Comment End: